A Scalable Framework for Monte Carlo Simulation Using FPGA-based Hardware Accelerators with Application to SPECT Imaging

Abstract

<p>As the number of transistors that are integrated onto a silicon die continues to in- crease, the compute power is becoming a commodity. This has enabled a whole host of new applications that rely on high-throughput computations. Recently, the need for faster and cost-effective applications in form-factor constrained environments has driven an interest in on-chip acceleration of algorithms based on Monte Carlo simula- tions. Though Field Programmable Gate Arrays (FPGAs), with hundreds of on-chip arithmetic units, show significant promise for accelerating these embarrassingly paral- lel simulations, a challenge exists in sharing access to simulation data amongst many concurrent experiments. This thesis presents a compute architecture for accelerating Monte Carlo simulations based on the Network-on-Chip (NoC) paradigm for on-chip communication. We demonstrate through the complete implementation of a Monte Carlo-based image reconstruction algorithm for Single-Photon Emission Computed Tomography (SPECT) imaging that this complex problem can be accelerated by two orders of magnitude on even a modestly-sized FPGA over a 2GHz Intel Core 2 Duo Processor. Futhermore, we have created a framework for further increasing paral- lelism by scaling our architecture across multiple compute devices and by extending our original design to a multi-FPGA system nearly linear increase in acceleration with logic resources was achieved.</p>